Dear all -
We are planning to perform a large scale evaluation of the “EteRNA ensemble algorithm.” - Specifically, we want to test the algorithm on lab shapes that other automated algorithms such as ViennaRNA and NUPACK will fail!
We’ll synthesize 12 designs for each puzzle - 4 by NUPACk and 4 + 4 by 2 different versions of EteRNA ensemble algorithms, and we want our players to pick the shapes!
Please write down the puzzle you would want to test the automated algorithms - Again, please note that we are looking for hard cases where algorithms would normally fail and want to see if EteRNA ensemble algorithm can make an improvement!
You can find the list of lab shape candidates here.
We are looking forward to seeing exciting shapes from players.