I am interested in the calculations done when playing this game.
Could I get the calculations for energies of loops and molecules?
And also it would be nice if I could get the algorithm which determines how the molecule folds. Thank you.
Hi Mtutnid,
The game use ViennaRNA internally:
http://www.tbi.univie.ac.at/~ivo/RNA/
A number of players have also been playing with other folding algorithms on-line. I’m sure you can ask around on chat.