I was trying to beam Pi’s 2 state switch puzzle to the puzzlemaker from the lab. I wanted the dot bracket from both structures. Earlier just a single beam to the puzzlemaker would have achieved this.
Here is what I did:
Here is what happened:
Notice that I get only one of the dot brackets. State 1 is just a bunch of dots.
Omei found a work around for getting the dot brackets for both states. I have added images:
- Beam to puzzle maker.
- Even though the molecule appears to be bound, it isn’t. Use the molecule binding tool to cement it in place.
- Switch to Natural mode
- Use the “Add base” tool to add base in state 2 at the 3’ end and then delete it with the “Remove base” tool. Puzzle maker should fill in the new structure.
Eli: This need to be done with the game buttons and not in the dot bracket. I found it easier to add in the 5’ end of the state 2, so that is what I did. Then I removed the base again with the Ø button. Notice that the state 2 has become stable.
- Repeat add/delete for state 1.
Now there are dot brackets for both states.
Amybarish and DigitalEmbrace have earlier called out this problem with missing dot brackets for lab beam.