Thought I’d start sharing some of the websites I come across. Some of you might find them very useful. I’ll continue adding them as I go along.
Dolan DNA Learning Center
http://www.dnalc.org/websites/
Enjoy! 
I’ll add a few:
A great video lecture that introduced RNA folding algorithms (meant for CS majors so it’s light on the biochemistry)
http://echoserver.sinc.stonybrook.edu…
A collection of powerpoints by some of the guys who came up with the energy function to begin with (esp. the 4/7/09 lecture, the “secondary structure” lecture from 4/4/07, and Prof. Turner’s Lecture)
Video’s of the PCR process.
http://www.weedtowonder.org/sequencin…
You can also find more on youtube, and to a lesser degree dnatube.
Top Drugs of the World
http://cbc.arizona.edu/njardarson/gro…
Database Repository mostly focusing on Cancer.
http://sagebase.org/
Cloud Number Crunching Server
http://cloudnumbers.com/
Low Cost Electrophesis
http://www.pearlbiotech.com/
Gel Box Open Source Design
http://openwetware.org/wiki/DIYbio:No…
Pocket PCR
http://www.lava-amp.com/
genotyp
http://speakscience.org/
School Science Lessons
http://www.ncsu.edu/kenanfellows/kfp-…
Gel Electrophesis Virtual Lab
http://learn.genetics.utah.edu/conten…
World Peace and other 4th Grade Achievements
https://www.youtube.com/watch?v=0_ihrN…
http://www.ted.com/talks/john_hunter_…
The Comparative RNA Web Site and Project has a remarkable RNA2DMap:
The RNA Integrity Database (RINdb)
I can’t seem to find this, but it is quite highly referenced.
RNA Quality Control
http://www.biomedicalgenomics.org/RNA…
Nucleic Acid Database
http://ndbserver.rutgers.edu/
RNA Strand (The RNA secondary STRucture and statistical ANalysis Database )
http://www.rnasoft.ca/strand/
DNA BAser
http://www.dnabaser.com/download/DNA-…
GoCore
http://www.helsinki.fi/project/ritvos…
This one seems quite promising, in that it can automate a lot of what we do in Excel. I havent been able to get this working though. Hopefully someone else can figure it out.
Regarding the RNA Integrity Database, following are two links:
RNA integrity assessment – 1-pg description with additional links
http://www.chem.agilent.com/cag/featu…
The RNA Integrity Database (RINdb)
http://www.chem.agilent.com/RIN/
Virtual Lab Safety
http://www.starlite.nih.gov/
DNA CAD Software
http://cadnano.org/
http://cando.dna-origami.org/
Biology Quizzes
http://www.execulink.com/~ekimmel/gam…
Genomics Digital Lab
http://www.genomicsdigitallab.com/gdl…
lol I love the game above
Open textbooks
http://www.collegeopentextbooks.org/o…
Bio-Interactive
http://www.hhmi.org/biointeractive/vl…
OpenLearn
http://openlearn.open.ac.uk/mod/oucon…
Free, Non-credit, participatory online courses from Stanford CS on machine learning and artificial intelligence. Looks amazing! and potentially useful to aspiring bot designers. . .
http://www.ai-class.com/
http://www.ml-class.com/
NYTimes article about this (58,000 already enrolled).
http://www.nytimes.com/2011/08/16/sci…
Here is some fairly easy RNA intro’s.
Gene Silencing by microRNAs by Katharina Petsche
https://www.youtube.com/watch?v=t5jroSCBBwk
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