[Market strategy] Multiloop similarity

Energy inside two similar and same sized multiloop should be the same. (Multiloops with same numbers of arms and same numbers of nucleotides between arms) I’m thinking about designs with multiple multiloops, like the branches designs.

Penalize with -1 for each 0.5 energy difference between them.

Dear Eli,

Your strategy has been added to our implementation queue with task id 41. You can check the schedule of the implementation here.

ETA of the implementation is 7/22/2011

Thanks for sharing your idea!

EteRNA team