[Strategy Market] [Beta test experiment] Title: 1-1 Loop Energy V1

Title: 1-1 Loop Energy V1

Please note that the amounts for variables will need to be entered at the beginning of the program. So please assign a variable (for example E1-1) to represent the Energy of the 1-1 Loop.

If there is a 1-1 loop (only one un-bonded nt opposite only one un-bonded nt), then:

If the Energy of the loop is less than E1-1, then add 5 pts.

For the first run, E1-1 = -0.39.

Thank you,

Dear merryskies,

Your strategy has been added to our implementation queue with task id 9. You can check the schedule of the implementation here.

ETA of the implementation is Monday 6/6/2011

Thanks for sharing your idea!

EteRNA team

Hi merryskies,

We are having bit of trouble dealing with energies in loops in algorithms. We’ll implement your algorithm as soon as we fix the problem -we are sorry about the delay!

Dear merryskies,

We are glad to report that your strategy has been implemented and tested.

While implementing your strategy, we have made small changes to the parameters you specified to optimize the performance. Specifically,

Note that we’ll always run a optimization over the parameters you specify, so you won’t have to worry about fine tuning all the numbers you use. Just the idea and rough numbers are enough to run your algorithm!

Length : Your strategy was implmented with 20 line of code.

Ordering : We ran your strategy on all synthesized designs and ordered them based on predicted scores. The correlation of your strategy’s ordering with the ordering based on the actual scores was 0.018. (1.0 is the best score, -1.0 is the worst score. A completely random prediction would have 0 correlation)

Please note that the numbers specified above will change in future as we’ll rerun your algorithm whenever new synthesis data is available.

More detailed result has been posted on the strategy market page. Thank you for sharing your idea, and we look forward to other brilliant strategies from you!