I heard about RNAfold yesterday and started wondering if there were any other sites that could help predict the shape of your RNA sequence. From RNAfold’s site, I got links to other sites and eventually a bunch of programs and on-site servers that give insight about RNA’s interaction.
The following links are programs and sites I found that should hopefully help you analyze RNA sequence better. I’ve only had the chance to try a few of them:
The 1st one I tried was RNAshapes. It’s a small program that shows you the alternative shapes that you could get and their probabilities of occuring. There are a lot of data I don’t understand but I think someone should figure out all there is to know about the settings and data real soon.
I also loaded up donald 94 on Sfold, that seems to run from sFold and mFold’s engine and it gives you a lot different stats about your RNA and clean graphs for the visuals amongst us.
RNA folding program:
RNA On-site rendering:
If you’re not sure what program to try out, you could always get names from wikipedia and search them online!