Gameplay and Strategies

Tools This category is for discussion of tools to help your Eterna experience, from scripts to visualization tools to scoring algorithms, and Eterna’s APIs and other utilities that can help you build them! Guides and Tutorials Post your resources to help other players here!

Topic	Replies	Views	Activity
About the Gameplay and Strategies category Gameplay and Strategies	0	227	June 26, 2020
Viewing chemical mapping results in OpenKnot projects Guides and Tutorials	0	82	March 9, 2024
Finding Similar Sequences in Nature using BLAST Guides and Tutorials	14	218	December 27, 2023
Computationally selected elements - analysis tool for lab data. Tools	15	216	November 25, 2023
Lab questions Gameplay and Strategies	3	120	September 21, 2023
Serena is now pip installable via PyPi.com for python3.9 Tools	0	109	September 5, 2023
Pseudoknot Finder tool Tools pseudoknot	25	772	July 16, 2023
Random Sequence (Pknot?) generator script Gameplay and Strategies	2	165	July 10, 2023
New Folding Engine Discussion: EternaFoldThreshknots Gameplay and Strategies pseudoknot , algorithm	20	769	June 22, 2023
Spreadsheet to take a substring of any RNA sequence Tools	2	229	June 10, 2023
Mutation Booster v3 mass submission for The pseudoknot labs Gameplay and Strategies pseudoknot	1	165	May 17, 2023
Link to my manuscript that is a primer on RNA structure and folding, as well as the first official introduction in writing of my theory for how to understand and explain all RNA shape formation and movement that is called the Mechanics of RNA Guides and Tutorials	1	128	May 8, 2023
How to make a pseudoknot Gameplay and Strategies	0	140	May 8, 2023
Testing the pseudoknot: A tale of two methods Guides and Tutorials	2	227	May 5, 2023
Beam to Puzzlemaker Gameplay and Strategies	7	315	May 1, 2023
New puzzle feature - Paste target structure Guides and Tutorials	2	317	April 18, 2023
Describing direction in secondary structure Guides and Tutorials	8	219	January 4, 2023
Puzzles with incorrect structure at 0 kcal? Gameplay and Strategies	3	183	September 17, 2022
Eternacon 2022 presentations and links Tools	21	508	August 26, 2022
New Functionality Added to Eterna NUPACK Folding Engine is Live Tools nupack , subopt	11	260	August 5, 2022
First 2 chapters of Draft of new RNA document (book?) Looking for thoughts and wanted to share early Gameplay and Strategies	12	220	June 29, 2022
Developing new psuedoknot logic for Nupack 3.0.4 aka Eterna's version for pknot labs and looking for testers Tools	0	203	June 26, 2022
First 4 chapters of RNA book on energies and mechanics Gameplay and Strategies	1	162	June 6, 2022
Nucleotide Ensemble Variation shows strong signal for designs with higher fold change Gameplay and Strategies	0	191	May 23, 2022
First version of NUPACK 4.0 jupyterlabs script with MFE and ensemble info Gameplay and Strategies	0	279	May 23, 2022
"L" mode in design mode Gameplay and Strategies	0	182	January 26, 2022
Randomize Gameplay and Strategies	2	213	December 21, 2021
Annotations Gameplay and Strategies	22	312	December 21, 2021
Eterna3D Ribosome and beyond Tools eterna3d	17	462	October 2, 2021
Database of ribosomal mutations and their effects on experimental viability Gameplay and Strategies	1	212	July 31, 2021